1. From the console of the XenServer containing the VM get a list of uuids by running "xe vm-list".
2. Copy the uuid of the VM in question and then run this command to destroy it "xe vm-destroy uuid=
It might take a couple of minutes for this command to complete but when it does the reference to the VM is now also removed from XenCenter. If a disk was associated with it, there should now be an option to delete it or it can also be attached to a different VM. It's possible that the data on this disk is salvageable but should be verified that it is in tact and consistent.
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